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Jul 10, 2024

The rapid evolution of de novo genes

Posted by in categories: biotech/medical, evolution, genetics

In 2006, just a few years after the fruit fly genome had been sequenced, geneticists at the University of California, Davis, made a startling discovery: Several new genes had cropped up, seemingly out of nowhere.

These “de novo genes” weren’t simply new variants of existing ones; they had sprung forth from the supposedly inert spaces in between the coding sections of DNA—regions long dismissed as the junkyards of the double helix. Since the days of Darwin, such sprightly biological change agents had never before been seen.

A young graduate student at the time, Li Zhao was so intrigued that upon graduating in 2011, she set out to join the lab of David Begun, where the discovery was first made. She soon revealed that these little genetic big bangs happen all the time­­—over the past decade, she and her team have identified more than 500 de novo genes in the Drosophila lineage alone.

Jul 10, 2024

Fully nonlinear neuromorphic computing with linear wave scattering

Posted by in category: robotics/AI

As the energy consumption of neural networks continues to grow, different approaches to deep learning are needed. A neuromorphic method offering nonlinear computation based on linear wave scattering can be implemented using integrated photonics.

Jul 10, 2024

Accelerating CAR-T Cell Therapy Research

Posted by in category: futurism

Cyagen has built a one-stop service platform for in vivo and in vitro CAR-T cell therapy research. The platform is available to researchers worldwide, which includes scFv sequence screening, CAR molecular design, and full-process services to develop the foundational research for your CAR-T cell therapy.

Jul 10, 2024

Whole exome sequencing analysis identifies genes for alcohol consumption

Posted by in categories: biotech/medical, computing, genetics, health

Over the recent decades, comprehensive genome-wide association studies (GWAS) have indicated the potential influence of genetic factors on one’s alcohol consumption volume and identified over 100 related variants6,7. However, a predominant proportion of the identified variants are localized within noncoding regions, and their effect sizes tend to be small, making interpretation and identification of the causal gene challenging8. In addition, previous GWAS mainly utilized imputed genotype data, which only cover limited regions of the genome, and thus may have missed many potential genes. Furthermore, GWAS studies focused mainly on common variants, and few studies have investigated rare variants associated with alcohol consumption, which yield greater potential to interpret biological function and elucidate mechanisms9. Although there are studies that have attempted to leverage exome chip data to identify rare variants contributing to alcohol consumption, the sample size was small and limited regions of the whole exome were examined10.

The introduction of whole exome sequencing (WES) provides a great chance to overcome the limitations of previous genetic studies on alcohol consumption with a substantially larger amount of rare and ultra-rare protein-coding variants11,12,13. Collapsing of loss-of-function (LOF) variants helps estimate the effect direction of associated genes13,14. When combined with large-scale population cohorts with multi-modal phenotypic data, WES would greatly facilitate our understanding of the genetic underpinnings of alcohol consumption as well as its implication on physical and mental health6. However, to our knowledge, there have been few large-scale WES studies on alcohol consumption, let alone elucidating the potential implications of the identified genes10,15. Meanwhile, as indicated by a previous genome-wide association study, significant genetic associations existed between alcohol consumption and several body health phenotypes7. The application of phenome-wide analysis for alcohol-related genes can help extend and deepen our current comprehension of the association between alcohol consumption and human health.

Hence, aiming to refine the genetic architecture of alcohol consumption, we conduct an exome-wide association study (ExWAS) for alcohol consumption among 304,119 individuals from the UK Biobank (UKB). We also examine the rare-variant associations with genes reported by previous GWAS6,7,16,17. Finally, we provide biological insights into the identified genes via bioinformatics analyses and phenome-wide association analysis (PheWAS).

Jul 10, 2024

Tiny TnpB: The next-generation genome editing tool for plants unveiled

Posted by in categories: biotech/medical, food, genetics

Genome editing stands as one of the most transformative scientific breakthroughs of our time. It allows us to dive into the very code of life and make precise modifications. Imagine being able to rewrite the genetic instructions that determine almost everything about an organism—how it looks, behaves, interacts with its environment, and its unique characteristics. This is the power of genome editing.

We use genome editing tools to tweak the genetic sequences of microbes, animals, and plants. Our goal? To develop desired traits and eliminate unwanted ones. This technology’s impact has been felt across biotechnology, human therapeutics, and agriculture, bringing rapid advancements and solutions.

The most widely used proteins in genome editing are Cas9 and Cas12a. These proteins are like the scissors of the genetic world, allowing us to cut and edit DNA. However, they are quite bulky, consisting of 1,000–1,350 amino acids. Advanced editing technologies like base editing and prime editing require the fusion of additional proteins with Cas9 and Cas12a, making them even bulkier. This bulkiness poses a challenge to delivering these proteins efficiently into cells, where the resides.

Jul 10, 2024

Antiferromagnetic phase transition in a 3D fermionic Hubbard model

Posted by in category: particle physics

Antiferromagnetic phaseion is observed in a three-dimensional fermionic Hubbard system comprising lithium-6 atoms in a uniform optical lattice with approximately 800,000 sites.

Jul 10, 2024

Tunable quantum emitters on large-scale foundry silicon photonics

Posted by in category: quantum physics

Integrating tunable quantum emitters with commercial photonic circuits is promising for quantum information applications but remains a challenge. Here the authors report integration of InAs/InP microchiplets containing quantum dot single photon emitters into a large-scale foundry silicon platform.

Jul 10, 2024

GPT-5 Will Have Ph.D Level Intelligence! (New GPT-5 Update)

Posted by in categories: futurism, robotics/AI

Are you ready to discover the future of AI with GPT-5? In this video, we’ll explore the latest upd…

Jul 10, 2024

Skild AI raises $300M to build a general-purpose, AI-powered brain for any robot

Posted by in categories: finance, robotics/AI

Skild AI, a startup that’s developing artificial intelligence-powered brains for robots, said today it has closed on a bumper $300 million early-stage funding round, bringing its valuation to a cool $1.5 billion.

The Series A round was led by a host of top-tier venture capital firms, including Lightspeed Venture Partners, Coatue, Softbank Group Corp. and Jeff Bezos’s Bezos Expeditions. It also saw participation from the likes of Felicis Ventures, Sequoia, Menlo Ventures, General Catalyst, CRV, Amazon, SV Angel and Carnegie Mellon University.

Skild AI is building what it says is a “shared, general-purpose brain” that will be able to equip a diverse group of robots that can perform multiple kinds of tasks in a wide range of scenarios, such as manipulating objects, locomotion and navigation. It says its AI intelligence can be integrated with any kind of robot, including humanoid bots with advanced computer vision skills designed to perform dexterous manipulation of objects in the home and in industrial settings, and more resilient quadruped robots that can navigate any physical environment.

Jul 10, 2024

Jack Szostak: The Early Earth and the Origins of Cellular Life

Posted by in category: biotech/medical

Lecture by Dr Jack Szostak, 2009 Nobel laureate in Physiology or Medicine, at the Molecular Frontiers Symposium \.

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