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Category: bioengineering – Page 5

Achieving the aggregation of different mutation types at multiple genomic loci and generating transgene-free plants in the T0 generation is an important goal in crop breeding. Although prime editing (PE), as the latest precise gene editing technology, can achieve any type of base substitution and small insertions or deletions, there are significant differences in efficiency between different editing sites, making it a major challenge to aggregate multiple mutation types within the same plant.

Recently, a collaborative research team led by Li Jiayang from the Institute of Genetics and Developmental Biology (IGDB) of the Chinese Academy of Science, developed a multiplex gene editing tool named the Cas9-PE system, capable of simultaneously achieving precise editing and site-specific random mutagenesis in rice.

By co-editing the ALSS627I gene to confer resistance to the herbicide bispyribac-sodium (BS) as a selection marker, and using Agrobacterium-mediated transient transformation, the researchers also achieved transgene-free gene editing in the T0 generation.

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Its a problem, but im sure ASI by 2035 will solve for a way to use a Crispr type tool with zero unintended alterations. Look for a way to use w/ out alterations in meantime, but worst case ASI will solve it.

Genome editing with various CRISPR-Cas molecule complexes has progressed rapidly in recent years. Hundreds of labs around the world are now working to put these tools to clinical use and are continuously advancing them.

CRISPR-Cas tools allow researchers to modify individual building blocks of genetic material in a precise and targeted manner. Gene therapies based on such gene editing are already being used to treat inherited diseases, fight cancer and create drought-and heat-tolerant crops.

The CRISPR-Cas9 molecular complex, also known as genetic scissors, is the most widely used tool by scientists around the world. It cuts the double-stranded DNA at the exact site where the genetic material needs to be modified. This contrasts with newer gene-editing methods, which do not cut the double strand.

Continue reading “Serious side effect of using CRISPR-Cas gene scissors uncovered: AZD7648 molecule can destroy parts of genome” | >

Proteins are so much more than nutrients in food. Virtually every reaction in the body that makes life possible involves this large group of molecules. And when things go wrong in our health, proteins are usually part of the problem.

In certain types of heart disease, for instance, the proteins in cardiac tissue, seen with , are visibly disordered. Alex Dunn, professor of chemical engineering, describes proteins like the beams of a house: “We can see that in unhealthy heart muscle cells, all of those beams are out of place.”

Proteins are the workhorses of the cell, making the biochemical processes of life possible. These workhorses include enzymes, which bind to other molecules to speed up reactions, and antibodies that attach to viruses and prevent them from infecting cells.

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Professor Carlos Duarte, Ph.D. is Distinguished Professor, Marine Science, and Executive Director, Coral Research \& Development Accelerator Platform (CORDAP — https://cordap.org/), Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST — https://www.kaust.edu.sa/en/study/fac…), in Saudi Arabia, as well as Chief Scientist of Oceans2050, OceanUS, and E1Series.

Prior to these roles Professor Duarte was Research Professor with the Spanish National Research Council (CSIC) and Director of the Oceans Institute at The University of Western Australia. He also holds honorary positions at the Arctic Research Center in Aarhus University, Denmark and the Oceans Institute at The University of Western Australia.

Professor Duarte’s research focuses on understanding the effects of global change in marine ecosystems and developing nature-based solutions to global challenges, including climate change, and developing evidence-based strategies to rebuild the abundance of marine life by 2050.

Building on his research showing mangroves, seagrasses and salt-marshes to be globally-relevant carbon sinks, Professor Duarte developed, working with different UN agencies, the concept of Blue Carbon, as a nature-based solution to climate change, which has catalyzed their global conservation and restoration.

Continue reading “Prof. Carlos Duarte, Ph.D. — Executive Director, Coral Research & Development Accelerator Platform” | >

“This is a highly engineered design, but the fundamental concepts are fairly simple,” said Dr. Jie Yin. “And with only a single actuation input, our robot can navigate a complex vertical environment.”

What influence can marine life have on robotics? This is what a recent study published in Science Advances hopes to address as a team of researchers from the University of Virginia and North Carolina State University have developed the fastest swimming soft robot by taking cues from manta ray fins. This study holds the potential to help researchers, engineers, and scientists develop faster and more efficient swimming soft robots that can be used for a variety of purposes worldwide.

This study builds on a 2022 study conducted by this same team of researchers that explored swimming soft robots that exhibited butterfly strokes, achieving a then-record of 3.74 body lengths per second, along with demonstrating high power efficiency, low energy use, and high maneuverability. For this new study, the researchers developed fins used by manta rays with the goal of achieving greater results than before. The fins are flexible when not in use but become rigid when the researchers pumped air into the silicone body that encompasses the soft robot.

In the end, the researchers not only achieved low energy use and maneuverability, but also broke their own record of body lengths per second at 6.8. Additionally, the manta ray-inspired swimming soft robot was able to avoid obstacles, which was an improvement from their 2022 study.

Continue reading “Engineering a Faster, More Efficient Soft Robot with Manta Ray-Inspired Fins” | >

Researchers at TU Delft have discovered that E. coli bacteria can synchronize their movements, creating order in seemingly random biological systems. By trapping individual bacteria in micro-engineered circular cavities and coupling these cavities through narrow channels, the team observed coordinated bacterial motion. Their findings, which have potential applications in engineering controllable biological oscillator networks, were recently published in Small.

An audience clapping in rhythm, fireflies flashing in unison, or flocks of starlings moving as one—synchronization is a natural phenomenon observed across diverse systems and scales. First described by Christiaan Huygens in the 17th century, synchronization was famously illustrated by the aligned swinging of his pendulum clocks. Now, TU Delft researchers have shown that even E. coli bacteria—single-celled organisms only a few micrometers long—can display this same phenomenon.

“This was a remarkable moment for our team,” said Farbod Alijani, associate professor at the Faculty of Mechanical Engineering. “Seeing bacteria ‘dance in sync’ not only showcases the beauty of nature but also deepens our understanding of the microscopic origins of self-organization among the smallest living organisms.”

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“In vivo measurement of basement membrane stiffness showed that ISCs reside in a more rigid microenvironment at the bottom of the crypt,” the article’s authors wrote. “Three-dimensional and two-dimensional organoid systems combined with bioengineered substrates and a stretching device revealed that PIEZO channels sense extracellular mechanical stimuli to modulate ISC function.”

The paper’s first author is Meryem Baghdadi, PhD, a former researcher at SickKids, and the paper’s senior authors are Tae-Hee Kim, PhD, a senior scientist at SickKids, and Danijela Vignjevic, PhD, a research director at Institut Curie. The study they led expanded on the work of one of the paper’s co-authors, Xi Huang, PhD, a senior scientist at SickKids.

In 2018, Huang found that PIEZO ion channels influence tumor stiffening in brain cancer. Inspired by this research, the collaborators in the current study set out to explore how stem cells in the intestines use PIEZO channels to stay healthy and function properly.

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Thanks to CRISPR, medical specialists will soon have unprecedented control over how they treat and prevent some of the most challenging genetic disorders and diseases.

CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a Nobel Prize-winning gene-editing tool, already widely used by scientists to cut and modify DNA sequences to turn genes on and off or insert new DNA that can correct abnormalities. CRISPR uses an enzyme known as Cas9 to cut and alter DNA.

Engineers at the USC Alfred E. Mann Department of Biomedical Engineering have now developed an update to the tool that will allow CRISPR technology to be even more powerful with the help of focused ultrasound.

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In a new Nature Communications study, scientists have developed a novel method for artificial cells to interact with their external environment without the need for complex modification processes.

This method could open new frontiers in , , and cell processes.

Biological cells are protected by a membrane, made of phospholipids, which modulates interactions with the outside environment. Recreating this in is challenging, requiring manual external modification of the membrane.

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