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Category: genetics – Page 251

Circa 2014

New collaborative research published in the journal Nature Communications by scientists from Japan, Russia and the US contains the genetic analysis on a species of African midge, which can survive a wide array of extreme conditions including large variations in temperature, extreme drought and even airless vacuums such as space. The team successfully deciphered the genetic mechanism that makes the midge invulnerable to these harsh conditions. Prof. Noriyuki Satoh and Dr. Takeshi Kawashima of Prof. Satoh’s Marine Genomics Unit, as well as Prof. Alexander Mikeyhev of the Ecology and Evolution Unit, and Mr. Manabu Fujie and Dr. Ryo Koyanagi of the DNA Sequencing Section at the Okinawa Institute of Science and Technology Graduate University have contributed to the collaboration.

The midge, Polypedilum vanderplanki, is capable of anhydrobiosis, a unique state that allows an organism to survive even after losing 97% of its body water. Anhydrobiotic organisms are also able to survive other severe conditions such as extreme temperatures ranging from 90°C to-270°C, vacuums and high doses of radiation; all of which would be lethal to most other life forms.

The midge found in northern Nigeria lives in an environment where the dry season lasts for at least six months and droughts can last up to eight months. By the time eggs have hatched and larvae have developed, the pools of water they breed in have dried up. However these dried larvae can survive in this dehydrated state for more than 17 years. “This is a very interesting kind of phenomena,” remarks Prof. Satoh. “The first descriptions of this midge were more than 60 years ago… But serious research started only ten years ago.”

Continue reading “Researchers decipher genetic mechanism that makes the midge invulnerable to harsh conditions” | >

Many human diseases can differ between males and females in their prevalence, manifestation, severity or age of onset. Examples include Lupus, where more than 80% of patients are females; Alzheimer’s disease, where females have higher incidence and tend to suffer quicker cognitive decline; and COVID-19 infections that are frequently more severe in males.

These sex differences may have a that is attributable to the sex . The X chromosome—one of the two sex chromosomes—is known to play an important role in human development and disease. New research led by Penn State College of Medicine reveals for the first time that sex-biased diseases can be attributable to that escape X chromosome inactivation (XCI), a process that ensures that females do not overexpress genes on their X-chromosomes.

The team developed a that can identify these XCI escape genes, and it may also help in determining whether a female will develop a sex-biased disease and if the disease will become progressively worse over time. The tool may even be useful in understanding the in immune responses to COVID-19, as the disease is thought to produce more severe symptoms and higher mortality in men than in women.

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Circa 2000

A 1940 paper by Gamow and Mario Schoenberg was the first in a subject we now call particle astrophysics. The two authors presciently speculated that neutrinos could play a role in the cooling of massive collapsing stars. They named the neutrino reaction the Urca process, after a well known Rio de Janeiro casino. This name might seem a strange choice, but not to Gamow, a legendary prankster who once submitted a paper to Nature in which he suggested that the Coriolis force might account for his observation that cows chewed clockwise in the Northern Hemisphere and counterclockwise in the Southern Hemisphere.

In the 1940s Gamow began to attack, with his colleague Ralph Alpher, the problem of the origin of the chemical elements. Their first paper on the subject appeared in a 1948 issue of the Physical Review. At the last minute Gamow, liking the sound of ‘alpha, beta, gamma’, added his old friend Hans Bethe as middle author in absentia (Bethe went along with the joke, but the editors did not). Gamow and Alpher, with Robert Herman, then pursued the idea of an extremely hot neutron-dominated environment. They envisioned the neutrons decaying into protons, electrons and anti-neutrinos and, when the universe had cooled sufficiently, the neutrons and protons assembling heavier nuclei. They even estimated the photon background that would be necessary to account for nuclear abundances, suggesting a residual five-degree background radiation.

We now realize that their scheme was incorrect. The Universe began with roughly equal numbers of protons and neutrons. Collisions with electrons, positrons, neutrinos and anti-neutrinos are more important than neutron decay, and the absence of stable nuclei with atomic numbers of five and eight creates a barrier to further fabrication in the early Universe. Nevertheless Alpher, Gamow and Herman’s work was the first serious attempt to discuss the observable consequences of a big bang and the basic framework was correct. Ironically, the term ‘Big Bang’ was coined by Fred Hoyle, an advocate of a steady-state model of the universe, to make fun of Gamow’s efforts.

Continue reading “The Big Bang and the genetic code” | >

Mentions telomeres.

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People with rare disorders that cause shortened telomeres—protective caps that sit at the end of chromosomes—may be more likely to have blood cancers such as leukemia or myelodyplastic syndrome. Now, Johns Hopkins Medicine scientists have discovered several “self-correcting” genetic mutations in bone marrow that may protect such patients from these cancers.

In a study published online August 3 2021, in the Journal of Clinical Investigation, the researchers also suggest these mutations can serve as biomarkers that may indicate if patients with short telomere syndromes are likely to develop blood cancers.

Continue reading “Gene self-correction in ‘chromosome caps’ can beat mutations, help prevent blood cancers” | >

Summary: Researchers have identified 2,000 genes in humans linked to longevity. The genes are associated with biological mechanisms that drive the prolongation of life in mammals, including DNA repair, coagulation, and immune response.

Source: UPF Barcelona.

What determines the life expectancy of each species? This is a fundamental and highly complex question that has intrigued the field of research throughout history. From the evolutionary point of view, the major cause of these differences between species lies in their ecological adaptations. For example, life expectancy is longer in species adapted to living in trees, underground, or with large body mass, since all these adaptations reduce mortality by predation.

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Youthereum talking about rejuvenation, funding, there is a history lesson here but the modern look starts at 38:01.

My overview of the history of partial reprogramming — a novel approach to epigenetic rejuvenation that uses short bursts of Yamanaka factors expression to periodically roll back the epigenetic state of cells to a younger pattern.

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A newly discovered antibody was able to neutralize not only all strains of COVID-19, but other coronaviruses known to cause respiratory infections in humans — a potential silver bullet for a whole class of deadly, flu-like viruses.

Mutant viruses: As viruses spread, they undergo tiny genetic mutations, and when we find a unique version of the virus, we call it a new strain.

Occasionally, new strains appear that can spread more easily, evade the immune system, or cause more severe disease.

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The groups also explained why in previous studies by other scientists, the chromatin appeared to fill the cell nuclei. “When scientists plate cells on a glass slide in order to study them under a microscope, they change their volume and physically flatten them. This may perturb some of the forces governing chromatin arrangement and reduce the distance between the upper part of the nucleus to its base,” Safran explains.

If you open a biology textbook and run through the images depicting how DNA is organized in the cell’s nucleus, chances are you’ll start feeling hungry; the chains of DNA would seem like a bowl of ramen: long strings floating in liquid. However, according to two new studies—one experimental and the other theoretical—that are the outcome of the collaboration between the groups of Prof. Talila Volk of the Molecular Genetics Department and Prof. Sam Safran of the Chemical and Biological Physics Department at the Weizmann Institute of Science, this image should be reconsidered. Clarifying it is essential since DNA’s spatial arrangement in the nucleus can affect the expression of genes contained within the DNA molecule, and hence the proteins found in the cell.

This story began when Volk was studying how mechanical forces influence cell nuclei in the muscle and found evidence that muscle contractions had an immediate effect on gene expression patterns. “We couldn’t explore this further because existing methods relied on imaging of chemically preserved cells, so they failed to capture what happens in the cell nuclei of an actual working muscle,” she says.

To address this issue, Dr. Dana Lorber, a research associate in Volk’s group, led the design of a device that makes it possible to study muscle nuclei in live fruit fly larvae. The device holds the tiny, translucent larva within a groove that allows it to contract and relax its muscles but keeps its movement constrained so that it can be scanned by a fluorescence microscope. Using the device, the researchers obtained images of the internal, linearly-organized complexes of DNA and its proteins (known as chromatin), surrounded by the membrane of the muscle nuclei.

Continue reading “Novel imaging method reveals a surprising arrangement of DNA in the cell’s nucleus” | >

A genomic analysis of lung cancer in people with no history of smoking has found that a majority of these tumors arise from the accumulation of mutations caused by natural processes in the body. This study was conducted by an international team led by researchers at the National Cancer Institute (NCI), part of the National Institutes of Health (NIH), and describes for the first time three molecular subtypes of lung cancer in people who have never smoked.

These insights will help unlock the mystery of how lung cancer arises in people who have no history of smoking and may guide the development of more precise clinical treatments. The findings were published September 6 2021, in Nature Genetics.

“What we’re seeing is that there are different subtypes of lung cancer in never smokers that have distinct molecular characteristics and evolutionary processes,” said epidemiologist Maria Teresa Landi, M.D., Ph.D., of the Integrative Tumor Epidemiology Branch in NCI’s Division of Cancer Epidemiology and Genetics, who led the study, which was done in collaboration with researchers at the National Institute of Environmental Health Sciences, another part of NIH, and other institutions. “In the future we may be able to have different treatments based on these subtypes.”

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To Sheng-Ying Pao, the power of reframing CRISPR lies in what is absolutely ordinary: paper. In CRISPaper, Pao revisited a cultural past in the ancient art of papermaking.

Over thousands of years, farmers painstakingly converted the wild rice plant into a staple crop. Today, researchers are using CRISPR to change genes to optimize grain yield. However, rice is more than food. In ancient China, it was used to make paper.

Pao took rice stalks from plants edited with CRISPR and ground the fibers into pulp. She then poured the pulp over a mesh screen. Every time she dipped the screen into water, the plant fibers would lift and resettle on top of the mesh, eventually making paper. Through the genome-edited rice plant, an ancient practice was juxtaposed with cutting-edge technology. Pao’s meditative ritual of papermaking is a counterbalance to the strangeness of the source material.
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https://news.berkeley.edu/story_jump/crispaper-understanding…rough-art/

Continue reading “CRISPaper: Understanding CRISPR Gene-Editing through Art” | >