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How ‘jumping genes’ infiltrate DNA during cell division

Viruses are known to use the genetic machinery of the human cells they invade to make copies of themselves. As part of the process, viruses leave behind remnants throughout the genetic material (genomes) of humans. The virus-like insertions, called “transposable elements,” are snippets of genetic material even simpler than viruses that also use host cell machinery to replicate.

Nearly all these inserted elements have been silenced by our cells’ defense mechanisms over time, but a few, nicknamed “jumping genes,” can still move around the human genome like viruses. Just one, called long interspersed nuclear element 1 (LINE-1), can still move by itself.

As an element type that behaves like the retrovirus HIV, the LINE-1 “retrotransposon” is first copied into a molecule of RNA, the genetic material that partners with DNA, and then the RNA LINE-1 copy is converted back into DNA in a new place in the genome.

Gene-editing therapy shows early success in fighting advanced gastrointestinal cancers

Researchers at the University of Minnesota have completed a first-in-human clinical trial testing a CRISPR/Cas9 gene-editing technique to help the immune system fight advanced gastrointestinal (GI) cancers. The results, recently published in The Lancet Oncology, show encouraging signs of the safety and potential effectiveness of the treatment.

“Despite many advances in understanding the genomic drivers and other factors causing cancer, with few exceptions, stage IV remains a largely incurable disease,” said Emil Lou, MD, Ph.D., a gastrointestinal oncologist with the University of Minnesota Medical School, Masonic Cancer Center and M Health Fairview, and clinical principal investigator for the trial. “This trial brings a new approach from our research labs into the clinic and shows potential for improving outcomes in patients with late-stage disease.”

In the study, researchers used CRISPR/Cas9 gene-editing to modify a type of immune cell called tumor-infiltrating lymphocytes (TILs). By deactivating a gene called CISH, the researchers found that modified TILs were better able to recognize and attack .

AI identifies PHGDH as amyloid pathology driver in Alzheimer’s disease

Insomnia, depression, and anxiety are the most common mental disorders. Treatments are often only moderately effective, with many people experiencing returning symptoms. This is why it is crucial to find new leads for treatments. Notably, these disorders overlap a lot, often occurring together. Could there be a shared brain mechanism behind this phenomenon?

Siemon de Lange, Elleke Tissink, and Eus van Someren, together with their colleagues from the Vrije Universiteit Amsterdam, investigated brain scans of more than 40,000 participants from the UK Biobank. The research is published in the journal Nature Mental Health.

Tissink says, “In our lab, we explore the similarities and differences between , anxiety, and depression. Everyone looks at this from a : some mainly look at genetics and in this study, we look at brain scans. What aspects are shared between the disorders, and what is unique to each one?”

How morphogens steer early brain development by guiding stem cell gene activity

Just a few weeks after conception, stem cells are already orchestrating the future structure of the human brain. A new Yale-led study shows that, early in development, molecular “traffic cops” known as morphogens regulate the activation of gene programs that initiate stem cells’ differentiation into more specialized brain cells.

The Yale team found that sensitivity to these signaling morphogens can vary not only between stem cells from different donors, but between stem cells derived from the same individual.

“This is a new chapter in understanding how we develop and how development can be influenced by genomic changes between people and by within individuals,” said Flora Vaccarino, the Harris Professor in the Child Study Center at the Yale School of Medicine (YSM) and co-senior author of the research, published in the journal Cell Stem Cell.

Breakthrough DNA editing in Lactobacillus offers safer probiotics

A Kobe University team was able to edit the DNA of Lactobacillus strains directly without a template from other organisms. This technique is indistinguishable from natural variation and enabled the researchers to create a strain that doesn’t produce diabetes-aggravating chemicals.

Humans have improved the microorganisms we rely on for millennia, selecting variants that are better able to produce wine, yogurt, natto and many other products. More recently, direct genetic modification has emerged as a tool to exert more precise and efficient control over the improvement, but also has drawn much public criticism for often using DNA from unrelated organisms in these modifications. Kobe University bioengineer NISHIDA Keiji says, “As a consequence, using such transgenic techniques is not favorable for food products due to legislations being restrictive and social acceptance being low.”

Nishida and his team have developed a technique that gives even more precise control over the genetic content of a microorganism that does not rely on template DNA from other organisms. He says: “We have invented a DNA base editing technology named ‘Target-AID,’ which is superior to conventional techniques such as ‘CRISPR-Cas9’ in several aspects. For example, CRISPR-Cas9 induces DNA breaks and often causes cell death, while our Target-AID inserts precise point mutations without such breaks.”

Novel intranasal vaccine technology shows promise for broad protection against respiratory viruses

Vaccines save millions of lives every year, but there is still an urgent need for more efficient vaccines. Strategies to combat serious outbreaks of viral infections are particularly important. Such infections are initiated at mucosal surfaces, where there is a close association between polarized epithelial cells and immune effector cells. However, vaccines are usually given intramuscularly or subcutaneously, and often do not provide sufficient protection at the actual site of infection.

In Nature Communications, the laboratory of Professor Jan Terje Andersen and collaborators report on a novel vaccine technology platform, in which the subunit antigen is genetically fused to albumin.

Albumin was chosen as a carrier as it is actively transported across the mucosal barrier by FcRn, a receptor found on mucosal epithelial cells.

Technological Approach to Mind Everywhere | Michael Levin

Extract from “Evolution, Basal Cognition and Regenerative Medicine”, kindly contributed by Michael Levin in SEMF’s 2023 Interdisciplinary Summer School (https://semf.org.es/school2023/). Full talk: • Michael Levin | Evolution, Basal Cogn… TALK ABSTRACT Each of us has made the remarkable journey from a single cell (a quiescent oocyte) to a complex embodied mind. How do cells, which were once independent organisms, work together to pursue the anatomical and physiological goals that enable form and function to reliably self-assemble? In this talk, I will tell the story of the collective intelligence of cellular swarms that embodies William James’ definition of intelligence: same ends by different means. I will describe the amazing competencies of the morphogenetic process that builds bodies and minds, and our discoveries on bioelectricity — the cognitive glue that implements embryogenesis, regeneration, and cancer suppression. I will end with a perspective on how biophysical, informational, and behavioral sciences are coming together to redefine the boundaries of the possible in biomedicine and beyond. MICHAEL LEVIN Department of Biology, Tufts University: https://as.tufts.edu/biology Tufts University profile: https://ase.tufts.edu/biology/labs/le… Institute profile: https://wyss.harvard.edu/team/associa… Wikipedia: https://en.wikipedia.org/wiki/Michael… ) Google Scholar: https://scholar.google.com/citations?… Twitter: / drmichaellevin LinkedIn: / michael-levin-b0983a6 SEMF NETWORKS Website: https://semf.org.es Twitter: / semf_nexus LinkedIn: / semf-nexus Instagram: / semf.nexus Facebook: / semf.nexus

Investigational gene therapy gives children with rare immune disorder a new lease on life

An investigational gene therapy has successfully restored immune function in all nine children treated with the rare and life-threatening immune disorder called severe leukocyte adhesion deficiency-I, or LAD-I, in an international clinical trial co-led by UCLA.

LAD-I is a genetic condition that affects approximately one in a million people in the world. It is caused by mutations in the gene that produces CD18, a protein that enables to travel from the bloodstream to infection sites.

In the absence of this critical protein, individuals with severe LAD-I—most of whom are diagnosed within their first months of life—are left vulnerable to dangerous, recurrent bacterial and fungal infections. Survival beyond childhood is rare without treatment.

Using Bacteria as Living Test Tubes to Study Human Gene Mutations and Find New Drug Leads

Traditional biochemical methods of studying human gene mutations are often laborious and costly. Now bioengineers at the University of California San Diego have developed a new simple approach to rapidly check on human gene changes and also screen chemicals as potential drugs by turning everyday bacteria into living test tubes.

The researchers published their new study in the April 30 issue of Nature Biomedical Engineering.

Human cells carry thousands of genes, and tiny changes in these genes can cause serious diseases. Usually, scientists study these changes by testing proteins in a test tube or in human cells. But those methods can be slow, expensive and sometimes hard to do.

Can One Gram of Omega-3 Really Slow Aging? Here’s What Science Says

A new study involving over 700 older adults suggests that taking one gram of omega-3 daily may help slow biological aging, with effects visible in molecular markers known as epigenetic clocks.

When combined with vitamin D and regular exercise, the anti-aging benefits became even more pronounced, lowering the risks of frailty and cancer as well.

Omega-3 linked to slower aging in humans.