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Category: genetics – Page 147

Bioelectric regulation of innate immune system function in regenerating and intact Xenopus laevis

Bioelectrical signaling in the African clawed frog modulates both resistance to infection and tail regeneration. Michael Levin at Tufts University in Massachusetts, USA, and colleagues have used genetic technologies and drug treatments to manipulate the bioelectrical properties of tissues in frog embryos. Reducing the electric gradient between the inside and outside of cells (depolarization) increased the embryos’ survival rate to bacterial infection, whereas increasing the resting potential (hyperpolarization) had the opposite effect. The authors found that serotonergic signaling and an increase in the number of myeloid cells underpin depolarization-induced immunity. Interestingly, embryos undergoing tail regeneration, which triggers depolarization, also showed increased resistance to infection.

Beyond CRISPR: seekRNA delivers a New Pathway for Accurate Gene Editing

Scientists at the University of Sydney have developed a gene-editing tool with greater accuracy and flexibility than the industry standard, CRISPR, which has revolutionized genetic engineering in medicine, agriculture and biotechnology.

SeekRNA uses a programmable ribonucleic acid (RNA) strand that can directly identify sites for insertion in genetic sequences, simplifying the editing process and reducing errors.

The new gene-editing tool is being developed by a team led by Dr. Sandro Ataide in the School of Life and Environmental Sciences. Their findings have been published in Nature Communications.

Noninvasive Alternative to Cancer Biopsy

The path toward a cancer diagnosis is anything but fun. Among the least enjoyable aspects of the journey are the invasive and often excruciating biopsies that are needed to collect information about the genetic mutations or chromosomal abnormalities of the cells in a growing tumor. This information is critical for an accurate diagnosis of a patient’s cancer, as well as for prognosis predictions and treatment selections. At the recent Acoustical Society of America meeting in Ottawa, Canada, Roger Zemp of the University of Alberta reported on an alternative method that he and his colleagues have developed for extracting this genetic information that uses sound waves rather than tissue removal. “Traditional biopsies with their big needles are scary and painful,” says Joy Wang, a master’s student who works with Zemp. “Our method is pain free and can provide clearer information about a cancer’s genetics.”

Biopsy needles are akin to hole punches for the flesh. These long, hollow needles can be over 2 mm in diameter and typically punch out a core of flesh between 1 and 2 mm in diameter. For comparison, the average blood-draw needle is half a millimeter in diameter. The large holes made by the biopsy needles significantly increase the likelihood of pain, swelling, bruising, or infection at the biopsy site, both during the biopsy collection and for days afterward.

The prospect of being left black and blue can cause patients significant anxiety. The worry can become so high that it can stop a person from getting a questionable lump or bump checked out. Therefore, researchers have been searching for less invasive, less frightening methods to retrieve the information that biopsies provide. Alternative techniques could also allow for earlier detection of some cancers, Zemp says.

Beyond CRISPR: Scientists Say New Gene Editing Tool Is Like a ‘Word Processor’ for DNA

“Bridge recombination can universally modify genetic material through sequence-specific insertion, excision, inversion, and more, enabling a word processor for the living genome beyond CRISPR,” said Berkeley’s Patrick Hsu, a senior author of one of the studies and Arc Institute core investigator, in a press release.

CRISPR Coup

Scientists first discovered CRISPR in bacteria defending themselves against viruses. In nature, a Cas9 protein pairs with an RNA guide molecule to seek out viral DNA and, when located, chop it up. Researchers learned to reengineer this system to seek out any DNA sequence, including sequences found in human genomes, and break the DNA strands at those locations. The natural machinery of the cell then repairs these breaks, sometimes using a provided strand of DNA.

Unlocking the Secrets of LUCA, Earth’s Earliest Life Form

A University of Bristol-led study found that life on Earth, stemming from a common ancestor called LUCA, flourished soon after the planet’s formation.

Through genetic analysis and evolutionary modeling, researchers pinpointed LUCA’s existence to about 4.2 billion years ago, revealing it as a complex organism with an early immune system integral to Earth’s earliest ecosystems.

Luca’s genetic blueprint and its descendants.

HUN-REN BRC researchers develop laser-guided microrobots for cell-capturing

This is pretty impressive, they can move around individual cells. Video in comments:

Researchers at the HUN-REN Biological Research Centre, Szeged, have developed tiny tools to capture individual cells. According to their study published in the journal Advanced Materials, key innovations of using flexible microrobots is that they do not require any treatment of the cells to grab them and also allow the cells to be released after examination, enabling more efficient investigations than ever before.

Single-cell investigation methods such as single-cell genetics, proteomics, or imaging-based morphological classification have risen to the forefront of biological research in the last decade. These methods require precisely controlled physical manipulation of individual cells on the microscopic scale. This manipulation at the single-cell level means their transportation and rotation in a controlled manner, for which several methods have been developed over the last decades. These cutting-edge methods use active movable microtools such as microgrippers similar in size to the cells, complex electrophoretic systems that use high-frequency electric fields to move the cells, or optothermal traps that create liquid flow through localised laser heating. The technique of optical tweezers fits into this category, being one of the most efficient single-cell manipulation methods and was awarded a Nobel prize in 2018.

Century-Old Biological Experiment Reveals Genetic Secrets of Important Crop

A long-term study since 1929 has revealed significant insights into barley’s evolution, showing its adaptation to different environments and the substantial impact of natural selection. This research underscores the limitations of evolutionary breeding and highlights the need for further exploration to enhance crop yields.

Utilizing one of the world’s oldest biological experiments, which commenced in 1929, researchers have revealed how barley, a major crop, has been influenced by agricultural pressures and its evolving natural environment. These findings highlight the significance of long-term studies in comprehending the dynamics of adaptive evolution.

The survival of cultivated plants after their dispersal across different environments is a classic example of rapid adaptive evolution. For example, barley, an important neolithic crop, spread widely after domestication over 10,000 years ago to become a staple source of nutrition for humans and livestock throughout Europe, Asia, and Northern Africa over just a few thousand generations. Such rapid expansion and cultivation have subjected the plant to strong selective pressures, including artificial selection for desired traits and natural selection by being forced to adapt to diverse new environments.

Modeling the origins of life: New evidence for an “RNA World”

LA JOLLA (March 4, 2024)—Charles Darwin described evolution as “descent with modification.” Genetic information in the form of DNA sequences is copied and passed down from one generation to the next. But this process must also be somewhat flexible, allowing slight variations of genes to arise over time and introduce new traits into the population.

But how did all of this begin? In the origins of life, long before cells and proteins and DNA, could a similar sort of evolution have taken place on a simpler scale? Scientists in the 1960s, including Salk Fellow Leslie Orgel, proposed that life began with the “RNA World,” a hypothetical era in which small, stringy RNA molecules ruled the early Earth and established the dynamics of Darwinian evolution.

New research at the Salk Institute now provides fresh insights on the origins of life, presenting compelling evidence supporting the RNA World hypothesis. The study, published in Proceedings of the National Academy of Sciences (PNAS) on March 4, 2024, unveils an RNA enzyme that can make accurate copies of other functional RNA strands, while also allowing new variants of the molecule to emerge over time. These remarkable capabilities suggest the earliest forms of evolution may have occurred on a molecular scale in RNA.

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