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Category: biotech/medical – Page 67

AI and biophysics unite to forecast high-risk viral variants before outbreaks

When the first reports of a new COVID-19 variant emerge, scientists worldwide scramble to answer a critical question: Will this new strain be more contagious or more severe than its predecessors? By the time answers arrive, it’s frequently too late to inform immediate public policy decisions or adjust vaccine strategies, costing public health officials valuable time, effort, and resources.

In a pair of recent publications in Proceedings of the National Academy of Sciences, a research team in the Department of Chemistry and Chemical Biology combined biophysics with artificial intelligence to identify high-risk viral variants in record time—offering a transformative approach for handling pandemics. Their goal: to get ahead of a virus by forecasting its evolutionary leaps before it threatens public health.

“As a society, we are often very unprepared for the emergence of new viruses and pandemics, so our lab has been working on ways to be more proactive,” said senior author Eugene Shakhnovich, Roy G. Gordon Professor of Chemistry. “We used fundamental principles of physics and chemistry to develop a multiscale model to predict the course of evolution of a particular variant and to predict which variants will become dominant in populations.”

Unlocking the mystery behind Barrett’s esophagus

A team led by researchers at Baylor College of Medicine and Washington University School of Medicine has shed light on the process that drives Barrett’s esophagus formation. This condition affects the lining of the esophagus—the tube that carries food from the mouth to the stomach—and increases the risk of developing esophageal adenocarcinoma, a serious and often deadly cancer.

The study, published in the Journal of Clinical Investigation, reveals that two important genes involved in guiding and maintaining the identity of the esophagus and intestine, SOX2 and CDX2, are altered in Barrett’s esophagus. The findings not only deepen our understanding of how the disease develops but also open the door to new ways of identifying people at risk and potentially preventing the condition from progressing to cancer.

“Esophageal adenocarcinoma is one of the fastest growing solid cancers. It is difficult to treat, and there are no effective screening techniques available,” said first and co-corresponding author Dr. Ramon Jin, assistant professor in the John T. Milliken Department of Medicine at Washington University.

New neurons continue to form in the adult human hippocampus: Study

A study in the journal Science presents compelling new evidence that neurons in the brain’s memory center, the hippocampus, continue to form well into late adulthood. The research from Karolinska Institutet in Sweden provides answers to a fundamental and long-debated question about the human brain’s adaptability.

The hippocampus is a brain region that is essential for learning and memory and involved in emotion regulation. Back in 2013, Jonas Frisén’s research group at Karolinska Institutet showed in a high-profile study that can form in the hippocampus of adult humans. The researchers then measured carbon-14 levels in DNA from , which made it possible to determine when the cells were formed.

First Step Towards an Artificial Human Genome Now Underway

As if sequencing a full human genome wasn’t tricky enough, scientists are now attempting to reconstruct our species’ genetic material from the ground up.

It’s an ambitious and controversial project called the Synthetic Human Genome (SynHG) project, and work has already begun on a proof-of-concept.

The goal of this crucial first step is to use the human genome blueprint to write the genetic code for a single, enormously long strand of DNA in just one of our chromosomes – making up approximately 2 percent of our total genome.

DNA Nanotubule‐Based Nanodevices with ATP‐Responsive Gating for Direct Cytosolic Delivery of Nucleic Acids and Proteins

Schematic illustration of two pathways for macromolecular therapeutics delivery: nanoparticle-adopted endocytosis (left) and DNA nanotubule-mediated cytosolic delivery (right). By bypassing conventio…

Research teases apart competing transcription organization models

Scientists at St. Jude Children’s Research Hospital have reconciled two closely related but contentious mechanisms underlying transcription, the process of converting genetic information in DNA into messenger RNA. Phase separation has been proposed as a driving force in transcription due to its ability to selectively concentrate proteins and DNA in discrete droplets.

Sphingosine simultaneously inhibits nuclear import and activates PP2A by binding importins and PPP2R1A

Mechanism of sphingosine mediated tumor suppression.

Both sphingosine and ceramide suppress tumor growth, but the molecular details of this regulation are currently unclear.

Sphingosine-like compounds bind to their target proteins and trigger structural changes that activate PP2A (the protein phosphatase 2A (PP2A) scaffold (PPP2R1A)) and inhibit the importins (KPNB1, TNPO1, IPO7, IPO5).

Together, these actions disable proteins that drive cancer initiation and progression (e.g., YAP, JUN, MYC, the androgen receptor, hnRNPA1, NF-κB, and ribosomal proteins) by triggering their proteasomal degradation and/or inhibiting their nuclear import.

Together, these pathways elicit more robust effects than activating PP2A or inhibiting importins individually.

The effect of endogenous sphingosine on these oncoproteins is limited by its metabolic conversion into ceramide or sphingosine-1-phosphate. https://sciencemission.com/Sphingosine-simultaneously-inhibits

Involvement of the Superior Cerebellar Peduncles in GAA-FGF14 Ataxia

This study found that involvement of the superior cerebellar peduncles is frequent in patients with GAA-FGF14 ataxia (SCA27B)

ObjectivesGAA-FGF14 ataxia (SCA27B) is a recently reported late-onset ataxia caused by a GAA repeat expansion in intron 1 of the FGF14 gene. After the clinical observation of superior cerebellar peduncle (SCP) involvement in some affected patients, we sought to verify the prevalence of this finding in our cohort and 4 additional independent cohorts of patients with SCA27B.

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