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480-million-year-old Parasite Still Plagues Today’s Shellfish

A new study has unexpectedly discovered that a common parasite of modern oysters actually started infecting bivalves hundreds of millions of years before the dinosaurs went extinct.

The research, published in iScience, used high-resolution 3D scans to look inside 480-million-year-old shells from a Moroccan site known for its exceptionally well-preserved sea life. The scans revealed a series of distinctive patterns etched both on the surface of the fossils and hidden inside them.

“The marks weren’t random scratches,” said Karma Nanglu, a UC Riverside paleobiologist who led the research. “We saw seven or eight of these perfect question mark shapes on each fossil. That’s a pattern.”

AI assistant developed for every step of the scientific process

Researchers have developed an AI-powered ‘scientific assistant’ designed to accelerate the scientific process by helping them identify new research questions, analyze and interpret data, and produce scientific documents.

The tool, called Denario, uses to help scientists with tasks from developing new hypotheses to compiling manuscripts. The team hopes Denario will make research faster, more dynamic and more interdisciplinary.

AI can already help with parts of the scientific process: tools like ChatGPT can visualize data or write abstracts, for example. But these tools are typically limited to one step at a time.

Viral Appropriation of Specificity Protein 1 (Sp1): The Role of Sp1 in Human Retro- and DNA Viruses in Promoter Activation and Beyond

Specificity protein 1 (Sp1) is a highly ubiquitous transcription factor and one employed by numerous viruses to complete their life cycles. In this review, we start by summarizing the relationships between Sp1 function, DNA binding, and structural motifs. We then describe the role Sp1 plays in transcriptional activation of seven viral families, composed of human retro- and DNA viruses, with a focus on key promoter regions. Additionally, we discuss pathways in common across multiple viruses, highlighting the importance of the cell regulatory role of Sp1. We also describe Sp1-related epigenetic and protein post-translational modifications during viral infection and how they relate to Sp1 binding. Finally, with these insights in mind, we comment on the potential for Sp1-targeting therapies, such as repurposing drugs currently in use in the anti-cancer realm, and what limitations such agents would have as antivirals.

Adapting Next-Generation Sequencing to in Process CRISPR-Cas9 Genome Editing of Recombinant AcMNPV Vectors: From Shotgun to Tiled-Amplicon Sequencing

The alphabaculovirus Autographa californica multiple nucleopolyhedrovirus (AcMNPV) is the most commonly used virus in the Baculovirus Expression Vector System (BEVS) and has been utilized for the production of many human and veterinary biologics. AcMNPV has a large dsDNA genome that remains understudied, and relatively unmodified from the wild-type, especially considering how extensively utilized it is as an expression vector. Previously, our group utilized CRISPR-Cas9 genome engineering that revealed phenotypic changes when baculovirus genes are targeted using either co-expressed sgRNA or transfected sgRNA into a stable insect cell line that produced the Cas9 protein.

The Cyborg Child: SCP-191 and the Ethics of Human Evolution

What happens when the pursuit of perfection forgets compassion?
SCP-191, known as The Cyborg Child, is one of the most haunting examples of speculative bioengineering ever documented. This essay examines the anatomy, psychology, and philosophy of a child transformed into a machine — a being caught between humanity and technology.

In this episode, we explore:

How cybernetic modification redefines the human body.

The science behind hybrid consciousness and neural integration.

The moral cost of evolution without empathy.

What SCP-191 reveals about the posthuman future.

Scientists reverse anxiety by rebalancing the brain

Researchers have discovered a specific set of neurons in the amygdala that can trigger anxiety and social deficits when overactive. By restoring the excitability balance in this brain region, they successfully reversed these symptoms in mice. The results point toward targeted neural therapies for emotional disorders. This finding could reshape how anxiety and depression are treated at the circuit level.

An Introduction to Ebolavirus Biology

I wrote this educational primer on ebolavirus as a fun exploration of a topic not related to my current research. While such knowledge may be useful in the event of some future ebolavirus epidemic, it is mostly just an exercise in curiosity and intellectual enrichment. #virology #molecularbiology.

My website version: [ https://logancollinsblog.com/2025/11/04/an-introduction-to-ebolavirus-biology/](https://logancollinsblog.com/2025/11/04/an-introduction-to-ebolavirus-biology/)

Substack version: [ https://loganthrashercollins.substack.com/p/an-introduction-…us-biology](https://loganthrashercollins.substack.com/p/an-introduction-…us-biology)


PDF version: An Introduction to Ebolavirus Biology – Logan Thrasher Collins

I wrote this educational primer as a fun exploration of a topic not related to my current research. While such knowledge may be useful in the event of some future ebolavirus epidemic, it is mostly just an exercise in curiosity and intellectual enrichment. I hope that you too enjoy learning about this fascinating (but scary!) virus as you browse my writeup. Also, if you’re an ebolavirus expert with concepts, edits, and/or ideas to offer, feel free to reach out with your additional insights! Shoutout: I’d like to give a special shoutout/thanks to Jain et al. (reference 4) and Bodmer et al. (reference 2). I used their papers extensively throughout the creation of writeup!

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The Glass Universe: How the Ladies of the Harvard Observatory Took the Measure of the Stars

In the mid-nineteenth century, the Harvard College Observatory began employing women as calculators, or “human computers,” to interpret the observations their male counterparts made via telescope each night. At the outset this group included the wives, sisters, and daughters of the resident astronomers, but soon the female corps included graduates of the new women’s colleges —Vassar, Wellesley, and Smith. As photography transformed the practice of astronomy, the ladies turned from computation to studying the stars captured nightly on glass photographic plates.

The “glass universe” of half a million plates that Harvard amassed over the ensuing decades—through the generous support of Mrs. Anna Palmer Draper, the widow of a pioneer in stellar photography—enabled the women to make extraordinary discoveries that attracted worldwide acclaim. They helped discern what stars were made of, divided the stars into meaningful categories for further research, and found a way to measure distances across space by starlight. Their ranks included Williamina Fleming, a Scottish woman originally hired as a maid who went on to identify ten novae and more than three hundred variable stars; Annie Jump Cannon, who designed a stellar classification system that was adopted by astronomers the world over and is still in use; and Dr. Cecilia Helena Payne, who in 1956 became the first ever woman professor of astronomy at Harvard—and Harvard’s first female department chair.

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