Soil science is entering a new era characterized by the integration of artificial intelligence (AI) multi-agent systems, extending the field beyond traditional machine learning (ML) applications such as digital soil mapping and spectroscopy. While current ML tools are effective for specific tasks, they often lack the reasoning, contextual integration, and adaptability required to address complex, dynamic soil systems. We propose multi-agent AI systems—autonomous, interactive software agents capable of perceptual processing, planning, and scientific reasoning—as a novel framework to support and accelerate soil science research. These agents can fulfill diverse roles, including synthesizing data from field sensors and remote sensing to create dynamic digital soil twins, generating hypotheses, designing experiments, and simulating climate-driven changes in soil function.