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Category: chemistry – Page 410

New virtual reality software allows scientists to ‘walk’ inside cells

Virtual reality software which allows researchers to ‘walk’ inside and analyse individual cells could be used to understand fundamental problems in biology and develop new treatments for disease.

The software, called vLUME, was created by scientists at the University of Cambridge and 3D image analysis software company Lume VR Ltd. It allows super-resolution microscopy data to be visualised and analysed in virtual reality, and can be used to study everything from individual proteins to entire cells. Details are published in the journal Nature Methods.

Super-resolution microscopy, which was awarded the Nobel Prize for Chemistry in 2014, makes it possible to obtain images at the nanoscale by using clever tricks of physics to get around the limits imposed by light diffraction. This has allowed researchers to observe molecular processes as they happen. However, a problem has been the lack of ways to visualise and analyse this data in three dimensions.

Scientists find neurochemicals have unexpectedly profound roles in the human brain

In first-of-their-kind observations in the human brain, an international team of researchers has revealed two well-known neurochemicals–dopamine and serotonin–are at work at sub-second speeds to shape how people perceive the world and take action based on their perception.

Furthermore, the neurochemicals appear to integrate people’s perceptions of the world with their actions, indicating dopamine and serotonin have far more expansive roles in the human nervous system than previously known.

Known as neuromodulators, dopamine and serotonin have traditionally been linked to reward processing–how good or how bad people perceive an outcome to be after taking an action.

The study online today in the journal *Neuron* opens the door to a deeper understanding of an expanded role for these systems and their roles in human health.

“An enormous number of people throughout the world are taking pharmaceutical compounds to perturb the dopamine and serotonin transmitter systems to change their behavior and mental health,” said P. Read Montague, senior author of the study and a professor and director of the Center for Human Neuroscience Research and the Human Neuroimaging Laboratory at the Fralin Biomedical Research Institute at Virginia Tech Carilion. “For the first time, moment-to-moment activity in these systems has been measured and determined to be involved in perception and cognitive capacities. These neurotransmitters are simultaneously acting and integrating activity across vastly different time and space scales than anyone expected.”

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“These neuromodulators play a much broader role in supporting human behavior and thought, and in particular they are involved in how we process the outside world,” Bang said. “For example, if you move through a room and the lights are off, you move differently because you’re uncertain about where objects are. Our work suggests these neuromodulators–serotonin in particular– are playing a role in signaling how uncertain we are about the outside environment.”

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Searching for the Chemistry of Life: Possible New Way to Create DNA Base Pairs

In the search for the chemical origins of life, researchers have found a possible alternative path for the emergence of the characteristic DNA pattern: According to the experiments, the characteristic DNA base pairs can form by dry heating, without water or other solvents. The team led by Ivan Halasz from the Rudjer Boskovic Institute and Ernest Mestrovic from the pharmaceutical company Xellia presents its observations from DESYs X-ray source PETRA III in the journal Chemical Communications.

“One of the most intriguing questions in the search for the origin of life is how the chemical selection occurred and how the first biomolecules formed,” says Tomislav Stolar from the Rudjer Boskovic Institute in Zagreb, the first author on the paper. While living cells control the production of biomolecules with their sophisticated machinery, the first molecular and supramolecular building blocks of life were likely created by pure chemistry and without enzyme catalysis. For their study, the scientists investigated the formation of nucleobase pairs that act as molecular recognition units in the Deoxyribonucleic Acid (DNA).

Our genetic code is stored in the DNA as a specific sequence spelled by the nucleobases adenine (A), cytosine ©, guanine (G) and thymine (T). The code is arranged in two long, complementary strands wound in a double-helix structure. In the strands, each nucleobase pairs with a complementary partner in the other strand: adenine with thymine and cytosine with guanine.

Nanoscale machines convert light into work

“In previous work, the researchers discovered that when optical matter is exposed to circularly polarized light, it rotates as a rigid body in the direction opposite the polarization rotation. In other words, when the incident light rotates one way the optical matter array responds by spinning the other. This is a manifestation of “negative torque”. The researchers speculated that a machine could be developed based on this new phenomenon.

In the new work, the researchers created an optical matter machine that operates much like a mechanical machine based on interlocking gears. In such machines, when one gear is turned, a smaller interlocking gear will spin in the opposite direction. The optical matter machine uses circularly polarized light from a laser to create a nanoparticle array that acts like the larger gear by spinning in the optical field. This “optical matter gear” converts the circularly polarized light into orbital, or angular, momentum that influences a nearby probe particle to orbit the nanoparticle array (the gear) in the opposite direction.”

Researchers have developed a tiny new machine that converts laser light into work. These optically powered machines self-assemble and could be used for nanoscale manipulation of tiny cargo for applications such as nanofluidics and particle sorting.

“Our work addresses a long-standing goal in the nanoscience community to create self-assembling that can perform work in conventional environments such as room temperature liquids,” said research team leader Norbert F. Scherer from the University of Chicago.

Scherer and colleagues describe the new nanomachines in Optica. The machines are based on a type of matter known as optical matter in which metal nanoparticles are held together by light rather than the that hold together the atoms that make up typical matter.

Engineers create nanoparticles that deliver gene-editing tools to specific tissues and organs

One of the most remarkable recent advances in biomedical research has been the development of highly targeted gene-editing methods such as CRISPR that can add, remove, or change a gene within a cell with great precision. The method is already being tested or used for the treatment of patients with sickle cell anemia and cancers such as multiple myeloma and liposarcoma, and today, its creators Emmanuelle Charpentier and Jennifer Doudna received the Nobel Prize in chemistry.

While is remarkably precise in finding and altering genes, there is still no way to target treatment to specific locations in the body. The treatments tested so far involve removing or immune system T cells from the body to modify them, and then infusing them back into a patient to repopulate the bloodstream or reconstitute an immune response—an expensive and time-consuming process.

Building on the accomplishments of Charpentier and Doudna, Tufts researchers have for the first time devised a way to directly deliver gene-editing packages efficiently across the and into specific regions of the brain, into immune system cells, or to specific tissues and organs in mouse models. These applications could open up an entirely new line of strategy in the treatment of neurological conditions, as well as cancer, infectious disease, and autoimmune diseases.

‘Re-writing the code of life’: Nobel chemistry prize goes to genome editing pioneers

The genetic editing technique has contributed to new cancer therapies and has the potential to be used in curing inheritable diseases.

Two women were awarded the Nobel Prize in chemistry Wednesday for their pioneering work on genome editing, which has the life-saving potential to be used to cure genetic diseases.el Prize in chemistry Wednesday for their pioneering work on genome editing, which has the life-saving potential to be used to cure genetic diseases.el Prize in chemistry on Wednesday for developing a method for genome editing that could be used to cure many diseases.

Inflight fiber printing toward array and 3D optoelectronic and sensing architectures

Scalability and device integration have been prevailing issues limiting our ability in harnessing the potential of small-diameter conducting fibers. We report inflight fiber printing (iFP), a one-step process that integrates conducting fiber production and fiber-to-circuit connection. Inorganic (silver) or organic {PEDOT: PSS [poly(3,4-ethylenedioxythiophene) polystyrene sulfonate]} fibers with 1- to 3-μm diameters are fabricated, with the fiber arrays exhibiting more than 95% transmittance (350 to 750 nm). The high surface area–to–volume ratio, permissiveness, and transparency of the fiber arrays were exploited to construct sensing and optoelectronic architectures. We show the PEDOT: PSS fibers as a cell-interfaced impedimetric sensor, a three-dimensional (3D) moisture flow sensor, and noncontact, wearable/portable respiratory sensors. The capability to design suspended fibers, networks of homo cross-junctions and hetero cross-junctions, and coupling iFP fibers with 3D-printed parts paves the way to additive manufacturing of fiber-based 3D devices with multilatitude functions and superior spatiotemporal resolution, beyond conventional film-based device architectures.

Small-diameter conducting fibers have unique morphological, mechanical, and optical properties such as high aspect ratio, low bending stiffness, directionality, and transparency that set them apart from other classes of conducting, film-based micro/nano structures (1–3). Orderly assembling of thin conducting fibers into an array or three-dimensional (3D) structures upscales their functional performance for device coupling. Developing new strategies to control rapid synthesis, patterning, and integration of these conducting elements into a device architecture could mark an important step in enabling new device functions and electronic designs (4, 5). To date, conducting micro/nanoscaled fibers have been produced and assembled in a number of ways, from transferring of chemically grown nanofibers/wires (6, 7), writing electrohydrodynamically deposited lines (8, 9), to drawing ultralong fibers (10, 11), wet spinning of fibers (12–14), and 2D/3D direct printing (15–18).

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