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Oct 5, 2012

Want to Get 70 Billion Copies of Your Book In Print? Print It In DNA

Posted by in categories: biological, biotech/medical, chemistry, futurism, information science, media & arts

I have been meaning to read a book coming out soon called Regenesis: How Synthetic Biology Will Reinvent Nature and Ourselves. It’s written by Harvard biologist George Church and science writer Ed Regis. Church is doing stunning work on a number of fronts, from creating synthetic microbes to sequencing human genomes, so I definitely am interested in what he has to say. I don’t know how many other people will be, so I have no idea how well the book will do. But in a tour de force of biochemical publishing, he has created 70 billion copies. Instead of paper and ink, or pdf’s and pixels, he’s used DNA.

Much as pdf’s are built on a digital system of 1s and 0s, DNA is a string of nucleotides, which can be one of four different types. Church and his colleagues turned his whole book–including illustrations–into a 5.27 MB file–which they then translated into a sequence of DNA. They stored the DNA on a chip and then sequenced it to read the text. The book is broken up into little chunks of DNA, each of which has a portion of the book itself as well as an address to indicate where it should go. They recovered the book with only 10 wrong bits out of 5.27 million. Using standard DNA-copying methods, they duplicated the DNA into 70 billion copies.

Scientists have stored little pieces of information in DNA before, but Church’s book is about 1,000 times bigger. I doubt anyone would buy a DNA edition of Regenesis on Amazon, since they’d need some expensive equipment and a lot of time to translate it into a format our brains can comprehend. But the costs are crashing, and DNA is a far more stable medium than that hard drive on your desk that you’re waiting to die. In fact, Regenesis could endure for centuries in its genetic form. Perhaps librarians of the future will need to get a degree in biology…

Link to Church’s paper

Source

Oct 4, 2012

How do you debunk this?

Posted by in categories: defense, engineering, finance, particle physics, physics, scientific freedom, space

Previous post in this Debunking Series.

——-

This video was broadcast on G4TV, September 19th 2012.

http://www.g4tv.com/videos/60838/dr-eric-w-davis-on-new-ligh…g-science/

Continue reading “How do you debunk this?” »

Oct 2, 2012

In Conversation with Albert-lászló Barabási on Thinking in Network Terms

Posted by in categories: complex systems, information science

One question that fascinated me in the last two years is, can we ever use data to control systems? Could we go as far as, not only describe and quantify and mathematically formulate and perhaps predict the behavior of a system, but could you use this knowledge to be able to control a complex system, to control a social system, to control an economic system?

We always lived in a connected world, except we were not so much aware of it. We were aware of it down the line, that we’re not independent from our environment, that we’re not independent of the people around us. We are not independent of the many economic and other forces. But for decades we never perceived connectedness as being quantifiable, as being something that we can describe, that we can measure, that we have ways of quantifying the process. That has changed drastically in the last decade, at many, many different levels.

Continue reading “Thinking in Network Terms” and watch the hour long video interview

Oct 2, 2012

Evolution in a Toxic World

Posted by in categories: biological, evolution

Earth is a hostile place — and that’s even before one starts attending school. Even when life first sparked into being, it had to evolve defenses to deal with a number of toxins, such as damaging ultraviolet light, then there were toxic elements ranging from iron to oxygen to overcome, later, there was DDT and other toxic chemicals and of course, there are all those dreaded cancers.

In Evolution In A Toxic World: How Life Responds To Chemical Threats [Island Press; 2012: Guardian Bookshop; Amazon UK;Amazon US], environmental toxicologist Emily Monosson outlines three billion years of evolution designed to withstand the hardships of living on this deadly planet, giving rise to processes ranging from excretion, transformation or stowing harmful substances. The subtitle erroneously suggests these toxins are only chemical in nature, but the author actually discusses more than this one subclass of toxins.

The method that arose to deal with these toxins is a plethora of specialised, targeted proteins — enzymes that capture toxins and repair their damages. By following the origin and progression of these shared enzymes that evolved to deal with specific toxins, the author traces their history from the first bacteria-like organisms to modern humans. Comparing the new field evolutionary toxicology to biomedical research, Dr Monosson notes: “In light of evolution, biomedical researchers are now asking questions that might seem antithetical to medicine”.

Continue reading “Evolution in a Toxic World”

Oct 2, 2012

The Ontological Einstein – Minipaper

Posted by in categories: existential risks, particle physics

The Ontological Einstein – One to Four

Otto E. Rossler and Dieter Fröhlich, Faculty of Science, University of Tübingen, Auf der Morgenstelle 8, 72076 Tubingen, Germany

One: Ontological clock slow-down downstairs in gravity

Two: Ontological rest-mass decrease downstairs in gravity

Continue reading “The Ontological Einstein – Minipaper” »

Oct 1, 2012

Debunking Antimatter Rockets for Interstellar Travel

Posted by in categories: education, engineering, physics, policy, space

Previous Post in this Debunking Series.

Why is it necessary to debunk bad or unrealistic technologies? If don’t we live in a dream world idealized by theoretical engineering that has no hope of ever becoming financially feasible. What a waste of money, human resources and talent. I’d rather we know now upfront and channel our energies to finding feasible engineering and financial solutions. Wouldn’t you?

We did the math required to figure out the cost of antimatter fuel one would require just to reach 0.1c and then cost at that velocity, never mind about reaching Alpha Centauri.

Table 2: Antimatter Rocket Fuel Costs to Alpha Centuariat 0.1c (in metric tons)
Source of Estimates Amount of Antimatter Required Maximum Velocity

Spacecraft Mass

Continue reading “Debunking Antimatter Rockets for Interstellar Travel” »

Oct 1, 2012

Debunking Conventional Rocket Interstellar Travel Once And For All

Posted by in categories: education, engineering, physics, policy, space

Previous Post in this Debunking Series.

Why is it necessary to debunk bad or unrealistic technologies? If don’t we live in a dream world idealized by theoretical engineering that has no hope of ever becoming financially feasible. What a waste of money, human resources and talent. I’d rather we know now upfront and channel our energies to finding feasible engineering and financial solutions. Wouldn’t you?

We did the math required to figure out how much fuel one would require just to reach 0.1c and then cost at that velocity until you reach Alpha Centauri and reverse thrust to orbit the star.

Table 1: Conventional Rocket Fuel Costs to travel to Alpha Centauri at 0.1c
Maximum Velocity (km/s)

1980’s cost ($/lb)

Continue reading “Debunking Conventional Rocket Interstellar Travel Once And For All” »

Oct 1, 2012

Liquor & Glass — Sellafield/BNFL Keeping a Lid on It

Posted by in categories: engineering, ethics, nuclear energy, policy, sustainability, transparency

Fukushima reawakened the world to the dangers of nuclear power, and reading back over Fearing Sellafield (2003) by Colum Kenny recently, I reflect back on how deflective and dishonest industry can be to steer clear of critical opinion. Seeing parallels suggested in other industries today, I wonder if much has really changed.

Highly Active Liquor (HAL) produced by the reprocessing of irradiated nuclear fuel at Sellafield, reached a level of 1,500 cubic meters in storage at its peak circa 2001, the capacity of a 50 meter Olympic swimming pool. Particularly unstable, a disruption to electricity & water coolant could result in such liquor boiling, overloading the ventilation filtration systems and leading to a nuclear accident. Containing about 80 times the amount released during the 1986 Chernobyl accident according to a report for the European Parliament at that time, we are rather fortunate such a serious accident never occurred. This analysis was provided by what became known as The WISE Report — so called due to associated with the World Information Service on Energy (WISE) in Paris. In response BNFL set out to reduce this liquor to a solid form known as ‘glass’ — borosilicate glass — much safer than when kept in liquid form, and put in storage — though much of it still remains to be vitrified.

In 2000/2001, the Nuclear Installations Inspectorate (NII) of the HSE published a number of reports on aspects of Sellafield that led to causes of concern. One report in particular entitled ‘an investigation into the falsification of pellet diameter data in the MOX demonstration facility at the BNFL Sellafield site and the effect of this on the safety of MOX fuel in use’ suggested deliberate dishonesty in keeping records. BNFL subsequently complied with most of these recommendations.

Authors of the WISE report however still had concerns regarding increases in levels in certain sea discharges and aerial releases, and inconsistent with the UK’s obligations under the OSPAR Convention. It stated that the deposition of plutonium within 20km of Sellafield attributable to aerial emissions has been estimated at 160–280 billion becquerels — several times the plutonium fallout from all atmospheric nuclear weapons testing, and that 250kg-500kg of plutonium from Sellafield has been absorbed as sediments on the bed of the Irish sea ‘representing a long-term regional hazard of largely unknown proportions’. The report had been treated with caution by the European Commission and conveniently dismissed by the National Radiological Protection Board in the UK by claiming that some of the conclusions drawn in the report were based on ‘lacking objectivity’. It seems that governments are always bent towards safeguarding industry first, leaving environmental concerns and the health of our Mother Ship as a secondary issue.

Sep 29, 2012

Debunking Time Travel (Looper)

Posted by in categories: media & arts, physics, policy, space

Previous Post in this Debunking Series.

I just watched Looper the movie. It is such a good movie and a great story. But then I’m biased. Anything with Bruce Willis is a great movie. Bruce Willis is getting older, which reminds me so am I!

For those who have not watched Looper I won’t give the story away … Looper is a must watch for science fiction fans. And there were other great movies and episodes about time travel. The three Back to the Future, and the Star Trek episodes, for starters.

That was the good news, and now for the bad news. Time travel is impossible. The mathematics behind time travel is excellent, but the physics is not. In contemporary physics, the mechanism of time travel requires wormholes. You get into a wormhole on one side and you pop out the other side either in the future or in the past, depending on what the wormhole was designed to do.

Continue reading “Debunking Time Travel (Looper)” »

Sep 28, 2012

The Social Sciences Revolution

Posted by in categories: biological, complex systems, economics, geopolitics, philosophy, policy

Scientific discovery in the natural sciences has proceeded at an exponential rate and we are now seeing the social sciences experience a profound transformation as a consequence of computational social science. How far computational social science will reinvent social science is the big question. Some of the themes I’ve explored in my own work have been about the relationship between political philosophy and science and whether the computational sciences can help formulate new conceptions of societal organisation. Many in the field seem to think so.

These three things—a biological hurricane, computational social science, and the rediscovery of experimentation—are going to change the social sciences in the 21st century. With that change will come, in my judgment, a variety of discoveries and opportunities that offer tremendous prospect for improving the human condition. It’s one thing to say that the way in which we study our object of inquiry, namely humans, is undergoing profound change, as I think it is. The social sciences are indeed changing. But the next question is: is the object of inquiry also undergoing profound change? It’s not just how we study it that’s changing, which it is. The question is: is the thing itself, our humanity, also changing? (Nicholas A. Christakis, A NEW KIND OF SOCIAL SCIENCE FOR THE 21st CENTURY)

A biological understanding of human nature combined with new insights derived from computational social science can potentially revolutionise political, social and economic systems. Consequently there are profound philosophical implications. Secular political philosophy specifically emerged out of the European experience of Church and monarchical rule, and socialism emerged out of the experience of industrialisation and capitalist ideology. Therefore is it possible that a new political philosophy could emerge out of the reinvention of the social sciences?

One question that fascinated me in the last two years is, can we ever use data to control systems? Could we go as far as, not only describe and quantify and mathematically formulate and perhaps predict the behavior of a system, but could you use this knowledge to be able to control a complex system, to control a social system, to control an economic system? (Albert-lászló Barabási, THINKING IN NETWORK TERMS)

Continue reading “The Social Sciences Revolution” »