Chemistry – Lifeboat News: The Blog

Jun 18
2019

Rules of brain architecture revealed in large study of neuron shape and electrophysiology

To understand our brains, scientists need to know their components. This theme underlies a growing effort in neuroscience to define the different building blocks of the brain—its cells.

With the mouse’s 80 million neurons and our 86 billion, sorting through those delicate, microscopic building blocks is no small feat. A new study from the Allen Institute for Brain Science, which was published today in the journal Nature Neuroscience, describes a large profile of mouse neuron types based on two important characteristics of the cells: their 3D shape and their electrical behavior.

The study, which yielded the largest dataset of its kind from the adult laboratory mouse to date, is part of a larger effort at the Allen Institute to discover the brain’s “periodic table” through large-scale explorations of brain cell types. The researchers hope a better understanding of cell types in a healthy mammalian brain will lay the foundation for uncovering the cell types that underlie human brain disorders and diseases.

Jun 13
2019

Gut microbes eat our medication

The first time Vayu Maini Rekdal manipulated microbes, he made a decent sourdough bread. At the time, young Maini Rekdal, and most people who head to the kitchen to whip up a salad dressing, pop popcorn, ferment vegetables, or caramelize onions, did not consider the crucial chemical reactions behind these concoctions.

Even more crucial are the reactions that happen after the plates are clean. When a slice of sourdough travels through the digestive system, the trillions of microbes that live in our gut help the body break down that bread to absorb the nutrients. Since the human body cannot digest certain substances — all-important fiber, for example — microbes step up to perform chemistry no human can.

“But this kind of microbial metabolism can also be detrimental,” said Maini Rekdal, a graduate student in the lab of Professor Emily Balskus and first-author on their new study published in Science. According to Maini Rekdal, gut microbes can chew up medications, too, often with hazardous side effects. “Maybe the drug is not going to reach its target in the body, maybe it’s going to be toxic all of a sudden, maybe it’s going to be less helpful,” Maini Rekdal said.

In their study, Balskus, Maini Rekdal, and their collaborators at the University of California San Francisco, describe one of the first concrete examples of how the microbiome can interfere with a drug’s intended path through the body. Focusing on levodopa (L-dopa), the primary treatment for Parkinson’s disease, they identified which bacteria are responsible for degrading the drug and how to stop this microbial interference.

Jun 10
2019

Forensic Database Biology Table

Biology Biometrics Chemistry/Toxicology Environmental Fire & Explosives Firearms & Toolmarks Questioned Documents

Technology/Digital Evidence Trace Evidence Other

Forensic databases — biology name sub

Jun 9
2019

Artificial life (often abbreviated ALife or A-Life) is a field of study wherein researchers examine systems related to natural life

Artificial life (often abbreviated ALife or A-Life) is a field of study wherein researchers examine systems related to natural life, its processes, and its evolution, through the use of simulations with computer models, robotics, and biochemistry.

Jun 9
2019

Study says new element 115, ununpentium, does exist

One more element may soon be added to the Periodic Table. On September 10, 2013, scientists reported evidence supporting the existence of element 115.

Jun 7
2019

Quantum chemistry on quantum computers

The special properties of quantum computers should make them ideal for accurately modelling chemical systems, Philip Ball discovers.

‘If you want to make a simulation of nature,’ the legendary physicist Richard Feynman advised in 1981, ‘you’d better make it quantum-mechanical.’ By ‘nature’, Feynman meant ‘stuff’: the particles and atoms and molecules we’re made from. His comment came in a talk published the following year, and is generally regarded as the founding text of quantum computing. It now looks even more prophetic than ever.

For although we are constantly told that the unique selling point of quantum computers is their enormous speed compared with the classical devices we currently use – a speed-up that exploits the counterintuitive laws of quantum mechanics – it seems that the most immediate benefit will be the one Feynman identified in the first place: we’ll be able to simulate nature better.

Jun 5
2019

Chinese scientists find 5 million tons of lithium deposits in Yunnan

Chinese scientists have found a major lithium deposit in Southwest China’s Yunnan Province, estimated to contain more than 5 million tons.

There are approximately 40 million tons of proven lithium reserves in the world, the Xinhua News Agency’s Globe magazine reported.

A team led by research fellow Wen Hanjie from the Institute of Geochemistry under the Chinese Academy of Sciences found 340,000 tons of lithium oxide in a test site in central Yunnan.

Jun 1
2019

Quick liquid packaging: Encasing water silhouettes in 3D polymer membranes for lab-in-a-drop experiments

The ability to confine water in an enclosed compartment without directly manipulating it or using rigid containers is an attractive possibility. In a recent study, Sara Coppola and an interdisciplinary research team in the departments of Biomaterials, Intelligent systems, Industrial Production Engineering and Advanced Biomaterials for Healthcare in Italy, proposed a water-based, bottom-up approach to encase facile, short-lived water silhouettes in a custom-made adaptive suit.

In the work, they used a biocompatible polymer that could self-assemble with unprecedented degrees of freedom on the water surface to produce a thin membrane. They custom designed the polymer film as an external container of a liquid core or as a free-standing layer. The scientists characterized the physical properties and morphology of the membrane and proposed a variety of applications for the phenomenon from the nanoscale to the macroscale. The process could encapsulate cells or microorganisms successfully without harm, opening the way to a breakthrough approach applicable for organ-on-a-chip and lab-in-a-drop experiments. The results are now published in Science Advances.

The possibility of isolating, engineering and shaping materials into 2-D or 3D objects from the nanometer to the microscale via bottom-up engineering is gaining importance in materials science. Understanding the physics and chemistry of materials will allow a variety of applications in microelectronics, drug delivery, forensics, archeology and paleontology and space research. Materials scientists use a variety of technical methods for microfabrication including two-photon polymerization, soft interference lithography, replica molding and self-folding polymers to shape and isolate the material of interest. However, most materials engineering protocols require chemical and physical pretreatments to gain the desired final properties.

May 22
2019

Newly discovered hybrid molecules could serve as a novel category of anti-cancer agent

Researchers from NYU Abu Dhabi’s (NYUAD) chemistry program and colleagues from the University’s biology program have developed and studied the biological activity of five new, metal-organic hybrid knotted molecules, termed metal-organic trefoil knots (M-TKs). These molecules can effectively deliver metals to cancer cells, demonstrating the potential to act as a new category of anti-cancer agents.

In a study published in the journal Chemical Science, NYUAD Research Scientists Farah Benyettou and Thirumurugan Prakasam from the Trabolsi Research Group, led by NYUAD Associate Professor of Chemistry Ali Trabolsi, report that these nanoscale, water-soluble M-TKs showed high potency in vitro against six cancer cell lines and in vivo in zebrafish embryos. Zebrafish-related studies were performed by NYUAD Postdoctoral Associate Anjana Ramdas Nair from the Sadler Lab.

The M-TKs, generated by metal-templated self-assembly of a simple pair of chelating ligands, were well tolerated in vitro by non-cancer cells but were significantly more potent than cisplatin, a common chemotherapy medication, in both human cancer cells—including those that were cisplatin-resistant—and in zebrafish embryos. In cultured cells, M-TKs introduce reactive oxygen species (ROS) that damage the mitochondria of cancer cells, but not the nuclear DNA or the plasma membrane.

May 20
2019

New autism research on single neurons suggests signaling problems in brain circuits

Autism affects at least 2% of children in the United States—an estimated 1 in 59. This is challenging for both the patients and their parents or caregivers. What’s worse is that today there is no medical treatment for autism. That is in large part because we still don’t fully understand how autism develops and alters normal brain function.

One of the main reasons it is hard to decipher the processes that cause the disease is that it is highly variable. So how do we understand how autism changes the brain?

Using a new technology called single-nucleus RNA sequencing, we analyzed the chemistry inside specific brain cells from both healthy people and those with autism and identified dramatic differences that may cause this disease. These autism-specific differences could provide valuable new targets for drug development.