Identifying the boundary between classical and quantum computation is a central challenge in quantum information. In multi-qubit systems, entanglement and magic are the key resources underlying genuinely quantum behaviour. While entanglement is well understood, magic — essential for universal quantum computation — remains relatively poorly characterised. Here we show that determining membership in the stabilizer polytope, which defines the free states of magic-state resource theory, requires super-exponential time $\exp( n^2)$ in the number of qubits $n$, even approximately. We reduce the problem to solving a $3$-SAT instance on $n^2$ variables and, by invoking the exponential time hypothesis, the result follows. As a consequence, both quantifying and certifying magic are fundamentally intractable: any magic monotone for general states must be super-exponentially hard to compute, and deciding whether an operator is a valid magic witness is equally difficult. As a corollary, we establish the robustness of magic as computationally optimal among monotones. This barrier extends even to classically simulable regimes: deciding whether a state lies in the convex hull of states generated by a logarithmic number of non-Clifford gates is also super-exponentially hard. Together, these results reveal intrinsic computational limits on assessing classical simulability, distilling pathological magic states, and ultimately probing and exploiting magic as a quantum resource.