{"id":193379,"date":"2024-07-23T18:24:28","date_gmt":"2024-07-23T23:24:28","guid":{"rendered":"https:\/\/lifeboat.com\/blog\/2024\/07\/dna-language-model-grover-learns-sequence-context-in-the-human-genome"},"modified":"2024-07-23T18:24:28","modified_gmt":"2024-07-23T23:24:28","slug":"dna-language-model-grover-learns-sequence-context-in-the-human-genome","status":"publish","type":"post","link":"https:\/\/lifeboat.com\/blog\/2024\/07\/dna-language-model-grover-learns-sequence-context-in-the-human-genome","title":{"rendered":"DNA language model GROVER learns sequence context in the human genome"},"content":{"rendered":"<p><a class=\"aligncenter blog-photo\" href=\"https:\/\/lifeboat.com\/blog.images\/dna-language-model-grover-learns-sequence-context-in-the-human-genome2.jpg\"><\/a><\/p>\n<p>Genomes can be modelled with language approaches by treating nucleotide bases A, C, G and T like text, but there is no natural concept of what the words would be and whether there is even a \u2018language\u2019 to be learned this way. Sanabria <i>et al.<\/i> have developed a language model called GROVER that learns with a \u2018vocabulary\u2019 of genome sequences with byte-pair encoding, a method from text compression, and shows good performance on genome biological tasks.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Genomes can be modelled with language approaches by treating nucleotide bases A, C, G and T like text, but there is no natural concept of what the words would be and whether there is even a \u2018language\u2019 to be learned this way. Sanabria et al. have developed a language model called GROVER that learns with [\u2026]<\/p>\n","protected":false},"author":661,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[11],"tags":[],"class_list":["post-193379","post","type-post","status-publish","format-standard","hentry","category-biotech-medical"],"_links":{"self":[{"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/posts\/193379","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/users\/661"}],"replies":[{"embeddable":true,"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/comments?post=193379"}],"version-history":[{"count":0,"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/posts\/193379\/revisions"}],"wp:attachment":[{"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/media?parent=193379"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/categories?post=193379"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/tags?post=193379"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}