{"id":176460,"date":"2023-11-21T17:25:29","date_gmt":"2023-11-21T23:25:29","guid":{"rendered":"https:\/\/lifeboat.com\/blog\/2023\/11\/site-specific-encoding-of-photoactivity-and-photoreactivity-into-antibody-fragments"},"modified":"2023-11-21T17:25:29","modified_gmt":"2023-11-21T23:25:29","slug":"site-specific-encoding-of-photoactivity-and-photoreactivity-into-antibody-fragments","status":"publish","type":"post","link":"https:\/\/lifeboat.com\/blog\/2023\/11\/site-specific-encoding-of-photoactivity-and-photoreactivity-into-antibody-fragments","title":{"rendered":"Site-specific encoding of photoactivity and photoreactivity into antibody fragments"},"content":{"rendered":"<p><a class=\"aligncenter blog-photo\" href=\"https:\/\/lifeboat.com\/blog.images\/site-specific-encoding-of-photoactivity-and-photoreactivity-into-antibody-fragments.jpg\"><\/a><\/p>\n<p>New light activated cancer treatment.<\/p>\n<hr>\n<p>Several antibodies and antibody fragments have been previously developed for the treatment of various diseases, including cancer<sup><a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 3\" title=\"Jovcevska, I. & Muyldermans, S. The therapeutic potential of nanobodies. BioDrugs 34, 11&ndash;26 (2020).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR3\" id=\"ref-link-section-d43665848e477\">3<\/a>,<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 4\" title=\"Scott, A. M., Wolchok, J. D. & Old, L. J. Antibody therapy of cancer. Nat. Rev. Cancer 12278&ndash;287 (2012).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR4\" id=\"ref-link-section-d43665848e480\">4<\/a><\/sup>. These antibodies bind to cell surface receptors expressed at higher levels on cancer cells, addressing a major challenge of selective cell targeting in cancer therapy. Although full-length antibodies have shown promise for treatment of several cancers, limited success has been demonstrated in eliminating solid tumors. Due to their large size, full-length antibodies are unable to diffuse deep into solid tumors<sup><a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 5\" title=\"Thurber, G. M. & Dane, K. Wittrup, a mechanistic compartmental model for total antibody uptake in tumors. J. Theor. Biol. 314, 57&ndash;68 (2012).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR5\" id=\"ref-link-section-d43665848e484\">5<\/a><\/sup>. In addition, it has been shown that high-affinity antibodies bind to the periphery of the tumor tissues, forming a barrier and preventing their further penetration<sup><a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 6\" title=\"Juweid, M. et al. Micropharmacology of monoclonal antibodies in solid tumors: direct experimental evidence for a binding site barrier. Cancer Res. 52, 5144&ndash;5153 (1992).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR6\" id=\"ref-link-section-d43665848e488\">6<\/a><\/sup>. Some studies in patients with cancer estimate that only 0.01% of the injected antibodies accumulate per gram of solid tumor tissue<sup><a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 7\" title=\"Epenetos, A. A. et al. Limitations of radiolabeled monoclonal antibodies for localization of human neoplasms. Cancer Res. 46, 3183&ndash;3191 (1986).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR7\" id=\"ref-link-section-d43665848e492\">7<\/a><\/sup>. Small antibody fragments with low molecular weight can diffuse much deeper into tissues, presenting an excellent alternative to full-length antibodies. However, small antibody fragments have a low residence time in the body and often have a higher rate of dissociation (<i>k<\/i><sub>off<\/sub>) from the target compared with full-length antibodies, limiting their clinical utility<sup><a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 8\" title=\"Adams, G. P. et al. Increased affinity leads to improved selective tumor delivery of single-chain Fv antibodies. Cancer Res. 58485&ndash;490 (1998).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR8\" id=\"ref-link-section-d43665848e501\">8<\/a><\/sup>. To address these challenges, antibody fragments are often multimerized<sup><a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 9\" title=\"van de Water, J. A. et al. Therapeutic stem cells expressing variants of EGFR-specific nanobodies have antitumor effects. Proc. Natl Acad. Sci. USA 109, 16642&ndash;16647 (2012).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR9\" id=\"ref-link-section-d43665848e505\">9<\/a>,<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 10\" title=\"Roovers, R. C. et al. A biparatopic anti-EGFR nanobody efficiently inhibits solid tumour growth. Int. J. Cancer 129, 2013&ndash;2024 (2011).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR10\" id=\"ref-link-section-d43665848e508\">10<\/a><\/sup> and\/or conjugated to larger proteins<sup><a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 11\" title=\"Tijink, B. M. et al. Improved tumor targeting of anti-epidermal growth factor receptor nanobodies through albumin binding: taking advantage of modular nanobody technology. Mol. Cancer Ther. 7, 2288&ndash;2297 (2008).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR11\" id=\"ref-link-section-d43665848e512\">11<\/a><\/sup>, which increases the size of antibody fragments, again reducing their ability to penetrate into the tumor.<\/p>\n<p>One solution to overcome the limitation of low residence time would be to replace the noncovalent interactions between the antibody fragment and its antigen with a covalent bond. In a notable effort, an affibody containing a photocrosslinker in its antigen binding region was shown to covalently link to its antigen and demonstrated higher accumulation on tumor tissues<sup><a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 12\" title=\"Brasino, M. et al. Anti-EGFR affibodies with site-specific photo-cross-linker incorporation show both directed target-specific photoconjugation and increased retention in tumors. J. Am. Chem. Soc. 140, 11820&ndash;11828 (2018).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR12\" id=\"ref-link-section-d43665848e519\">12<\/a><\/sup>. Another pioneering study involved developing affibodies containing a latent bioreactive amino acid in their antigen binding region that forms a covalent bond with the target antigen by proximity-dependent reaction without any external impetus<sup><a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 13\" title=\"Wang, N. et al. Genetically encoding fluorosulfate-l-tyrosine to react with lysine, histidine, and tyrosine via SuFEx in proteins in vivo. J. Am. Chem. Soc. 140, 4995&ndash;4999 (2018).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR13\" id=\"ref-link-section-d43665848e523\">13<\/a><\/sup>. However, the former had substantially lower binding affinity compared with its wild-type (wt) counterpart and thus, requires using a high concentration for efficient initial binding, while the latter could react with target antigen expressed on healthy cells causing side effects.<\/p>\n<p>Although antibody-based therapeutics are more selective than several cytotoxic small molecule drugs used for cancer treatment, they can cause cardiac toxicity and skin reactions<sup><a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 14\" title=\"Hansel, T. T. et al. The safety and side effects of monoclonal antibodies. Nat. Rev. Drug Discov. 9325&ndash;338 (2010).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR14\" id=\"ref-link-section-d43665848e530\">14<\/a><\/sup>. These side effects are due to the binding of the antibody to its receptor antigen expressed on healthy cells. This challenge could be addressed by activating antibody\u2013antigen binding in the tumor microenvironment. One notable example in this direction is the development of antibodies containing an inhibitory N-terminal domain that is removed by tumor-specific proteases<sup><a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 15\" title=\"Desnoyers, L. R. et al. Tumor-specific activation of an EGFR-targeting probody enhances therapeutic index. Sci. Transl. Med. 5207ra144 (2013).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR15\" id=\"ref-link-section-d43665848e534\">15<\/a><\/sup>. However, this approach would be difficult to extend to antibody fragments whose N terminus is not involved in antigen binding. We and others have also developed light-activated antibody fragments either by site-specific installation of photocaged functional groups or by introducing light-responsive proteins into antibodies<sup><a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" title=\"Bridge, T. et al. Site-specific encoding of photoactivity in antibodies enables light-mediated antibody-antigen binding on live cells. Angew. Chem. Int. Ed. Engl. 58, 17986&ndash;17993 (2019).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR16\" id=\"ref-link-section-d43665848e538\">16<\/a>,<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" title=\"Jedlitzke, B. et al. Photobodies: light-activatable single-domain antibody fragments. Angew. Chem. Int. Ed. Engl. 59, 1506&ndash;1510 (2020).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR17\" id=\"ref-link-section-d43665848e538_1\">17<\/a>,<a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 18\" title=\"Yu, D. et al. Optogenetic activation of intracellular antibodies for direct modulation of endogenous proteins. Nat. Methods 16, 1095&ndash;1100 (2019).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR18\" id=\"ref-link-section-d43665848e541\">18<\/a><\/sup>. In principle, such antibodies could be activated at the site of tumors using surgically implanted biocompatible light-emitting diodes (LEDs)<sup><a data-track=\"click\" data-track-action=\"reference anchor\" data-track-label=\"link\" data-test=\"citation-ref\" aria-label=\"Reference 19\" title=\"Zhang, H. & Rogers, J. A. Recent advances in flexible inorganic light emitting diodes: from materials design to integrated optoelectronic platforms. Adv. Opt. Mater. 7, 1800936 (2019).\" href=\"https:\/\/www.nature.com\/articles\/s41589-022-01251-9#ref-CR19\" id=\"ref-link-section-d43665848e545\">19<\/a><\/sup>, thereby reducing the side effects of antibody-based therapeutics.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>New light activated cancer treatment. Several antibodies and antibody fragments have been previously developed for the treatment of various diseases, including cancer3,4. These antibodies bind to cell surface receptors expressed at higher levels on cancer cells, addressing a major challenge of selective cell targeting in cancer therapy. Although full-length antibodies have shown promise for treatment [\u2026]<\/p>\n","protected":false},"author":513,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[11,1523],"tags":[],"class_list":["post-176460","post","type-post","status-publish","format-standard","hentry","category-biotech-medical","category-computing"],"_links":{"self":[{"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/posts\/176460","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/users\/513"}],"replies":[{"embeddable":true,"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/comments?post=176460"}],"version-history":[{"count":0,"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/posts\/176460\/revisions"}],"wp:attachment":[{"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/media?parent=176460"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/categories?post=176460"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/lifeboat.com\/blog\/wp-json\/wp\/v2\/tags?post=176460"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}